Analysis (Modes, Outputs, Interpretation)#

Cellucid’s Analysis panel helps you turn selections/highlights into interpretable results: summary plots, comparisons between groups, and exportable tables/figures.

These pages are written for mixed audiences:

  • Wet lab / non-technical: click-by-click recipes and “what success looks like”.

  • Computational users: definitions, assumptions, and interpretation pitfalls.

  • Power users: caching/state semantics, edge cases, and debugging playbooks.

Important

Analysis results depend on app state.

At minimum, always confirm:

  • which view/snapshot is active,

  • what is currently visible (filters),

  • what groups you’re comparing (highlight pages / derived pages),

  • and whether the required data (e.g., gene expression) is available in your dataset.

Tip

If you’re here because “analysis is empty / missing results”, start with Troubleshooting (analysis).

Fast path (pick what you’re trying to answer)#

You want to…

Start with

When it’s the right choice

Next page

Get a quick read on a selection/group

Quick

You want a fast “is this different?” summary

03_analysis_mode_quick_insights

Inspect distributions and details

Detailed Analysis

You need shape/variance/outliers, not just a single number

04_analysis_mode_detailed_analysis

See relationships between genes/fields

Correlation Analysis

You’re asking “do these move together?”

05_analysis_mode_correlation_analysis

Compare genes between two groups

Differential Expression (DE)

You have gene expression and two pages to compare (A vs B)

06_analysis_mode_differential_expression_de

Score a curated gene program

Gene Signature

You have a predefined gene set (pathway/module)

07_analysis_mode_gene_signature

Find markers for many groups at once

Marker Genes (Genes Panel)

You want one-vs-rest markers for every group in a categorical field

08_analysis_mode_genes_panel

Screenshot placeholder (you will replace later)#

Placeholder screenshot for the Analysis panel overview.

The Analysis panel summarizes and compares groups defined by selection/highlights, and depends on the active view and current filtering state.#